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Piecewise-linear models of genetic regulatory networks: Equilibria and their stability |
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R. Casey, H. de Jong, J.-L. Gouzé |
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Journal of Mathematical Biology, 52(1):27-56, 2005. |
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Qualitative approaches towards the analysis of genetic regulatory networks |
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H. de Jong, D. Ropers |
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Z. Szallasi, V. Periwal, J. Stelling (eds), System Modeling in Cellular Biology: From Concepts to Nuts and Bolts, MIT Press, Cambridge, MA, 125-148, 2006. |
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Modeling, analysis, and simulation of genetic regulatory networks: From differential equations to logical models |
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H. de Jong, D. Thieffry |
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In: D. Chatenay, S. Cocco, R. Monasson, D. Thieffry, J. Dalibard (eds.), Multiple Aspects of DNA and RNA: From Biophysics to Bioinformatics, Ecole d'été de Physique des Houches, Session LXXXII, Elsevier, Amsterdam, 2005, 325-351. |
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Genetic Network Analyzer: Qualitative simulation of genetic regulatory networks |
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H. de Jong, J. Geiselmann, C. Hernandez, M. Page |
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Bioinformatics, 19(3): 336-344, 2003 |
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Modeling and simulation of genetic regulatory networks by ordinary differential equations |
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H. de Jong, J. Geiselmann |
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J. Chen, E.R. Dougherty, I. Shmulevich, Z.J. Wang (eds), Genomic Signal Processing and Statistics, Hindawi Publishing Corporation, New York, 2005, 201‑239. |
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Qualitative simulation of genetic regulatory networks using piecewise-linear models |
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H. de Jong, J.-L. Gouzé, C. Hernandez, M. Page, T. Sari, J. Geiselmann |
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Bulletin of Mathematical Biology, 66(2):301-340, 2004. |
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Qualitative simulation of the initiation of sporulation in Bacillus subtilis |
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H. de Jong, J. Geiselmann, G. Batt, C. Hernandez, M. Page |
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Bulletin of Mathematical Biology, 66(2):261-300, 2004. |
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Control of bacteriophage Mu lysogenic repression |
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C. Ranquet, A. Toussaint, H. de Jong,G. Maenhaut-Michel, J. Geiselmann |
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Journal of Molecular Biology, 353(1), 186-195, 2005. |
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Analysis and verification of qualitative models of genetic regulatory networks: A model-checking approach |
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G. Batt, D. Ropers, H. de Jong, J. Geiselmann, R. Mateescu, M. Page and D. Schneider |
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Poster at the Nineteenth International Workshop on Qualitative Reasoning (QR'05), in B.Rinner, M. Hofbaur and F. Wotawa, eds., pp 54-59. 2005 |
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Modeling the dynamics of genetic regulatory networks: Continuous and discrete approaches |
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H. de Jong, R. Lima |
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J.-R. Chazottes, B. Fernandez (eds), Dynamics of coupled map lattices and of related spatially extended systems, Lecture Notes in Physics 671, Springer-Verlag, Berlin, 307-340, 2005. |
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Batt, Grégory |
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Boyer, Frédéric |
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Bronner, Gisèle |
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Calteau, Alexandra |
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Coissac, Eric |
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Daubin, Vincent |
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De Jong, Hidde |
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Declere, Stéphane |
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Drulhe, Samuel |
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Dufayard, Jean-François |
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Duret, Laurent |
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Gautier, Christian |
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Gouy, Manolo |
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Gueguen, Laurent |
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Hernandez, Céline |
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Lobry, Jean |
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Marais, Gabriel |
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Meunier, Julien |
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Morgat, Anne |
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Mouchiroud, Dominique |
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Nugues, Estelle |
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Page, Michel |
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Penel, Simon |
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Perrière, Guy |
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Piganeau, Gwenaele |
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Pisanti, Nadia |
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Ponger, Loïc |
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Rechenmann, François |
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Réguer, Erwan |
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Rivière-Rolland, Hélène |
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Rizzon, Carène |
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Ropers, Delphine |
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Sagot, Marie-France |
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Semon, Marie |
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Silvestre, Timothée |
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Spataro, Bruno |
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Tannier, Eric |
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Viari, Alain |
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Ziébelin, Danielle |
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