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Site map |
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| The Helix research group |
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Context and situation |
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Where are Rhône-Alpes, Grenoble, Lyon and Geneva ? |
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Mountains all around... |
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A short presentation of the french research system |
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Research activities |
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Comparative genomics |
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Evolutionary biology |
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String algorithmics |
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Tree and graph algorithmics |
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Data and knowledge modeling |
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Partnerships |
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Genostar |
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Sanofi-Synthélabo Recherche, Toulouse |
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GenoStar consortium |
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Swiss Institute of Bioinformatics (SIB) |
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CEA/LCP, Grenoble |
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Departamento de Ciência da Computação, Instituto de Matemática e Estatística, Universidade de São Paulo, Brazil |
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Université Joseph Fourier - CEA Grenoble - INRIA Rhône-Alpes |
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Rhône-Alpes Genopole |
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XRCE (Xerox Research Center Europe) |
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ORIEL IST project |
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CCSTI, Grenoble |
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Laboratoire Adaptation et Pathogénie des Microorganismes, FRE 2620, CNRS/UJF |
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Teaching activities |
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Continuing education in bioinformatics |
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The bioinformatics optional course of the master of computer science at university Joseph Fourier |
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Members |
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Group leader |
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Viari, Alain |
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Researchers and professors |
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Daubin, Vincent |
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De Jong, Hidde |
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Duret, Laurent |
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Gautier, Christian |
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Genoud, Philippe |
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Gouy, Manolo |
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Gueguen, Laurent |
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Kahn, Daniel |
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Lobry, Jean |
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Marais, Gabriel |
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Mouchiroud, Dominique |
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Mousset, Sylvain |
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Page, Michel |
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Perrière, Guy |
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Rechenmann, François |
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Ropers, Delphine |
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Sagot, Marie-France |
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Tannier, Eric |
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Ziébelin, Danielle |
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Software and system engineers |
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Delmotte, Stéphane |
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Iltis, Agnès |
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Lépy, Nathalie |
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Monte, Régis |
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Ribes, Emma |
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Spataro, Bruno |
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Post-doctoral students |
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Aouacheria, Abdel |
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Baldazzi, Valentina |
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Boyer, Frédéric |
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Dufayard, Jean-François |
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Penel, Simon |
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PhD students |
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Arigon, Anne-Muriel |
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Batt, Grégory |
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Calteau, Alexandra |
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Descorps-Declère, Stéphane |
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Drulhe, Samuel |
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Khelifi, Adel |
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Lacroix, Vincent |
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Melo de Lima, Christelle |
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Meunier, Julien |
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Navratil, Vincent |
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Palmeira, Leonor |
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Semon, Marie |
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External members |
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Coissac, Eric |
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Lachaize, Corinne |
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Morgat, Anne |
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Secretarial staff |
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De Coninck, Françoise |
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Pieri, Marie-Josèphe |
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Former members |
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Software engineers |
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Bruley, Christophe |
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Bruley, Stéphane |
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Brun, Antoine |
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Ciron, Pierre-Emmanuel |
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Dupierris, Véronique |
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Faroux, Gaël |
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Faucherand, Gilles |
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Hernandez, Céline |
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Réguer, Erwan |
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Silvestre, Thimothée |
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Wessel, Erik |
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Post-doctoral students |
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Hughes, Sandrine |
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Merienne, Stéphanie |
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Pillet, Violaine |
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Pisanti, Nadia |
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Provencher, Sébastien |
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Rivière-Rolland, Hélène |
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Tavarès, Raquel |
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PhD students |
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Piganeau, Gwenaële |
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Ponger, Loïc |
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Proux, Denys |
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Rizzon, Carène |
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Thormarat, Fabienne |
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Zelwer, Marina |
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External members |
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Dina, Jean |
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Fanchon, Eric |
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Métivier, Charles |
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Nugues, Estelle |
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| News from Helix |
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Initiez-vous à la bioinformatique ! |
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Les défis de la biologie intégrative |
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This website is outdated. |
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Software and database releases |
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Talks, seminars, poster presentations,... |
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PhD and Master thesis defenses |
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PhD thesis defense - Gregory Batt - February 24th - 2pm - INRIA Rhône-Alpes (Montbonnot, Grenoble, France) |
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PhD thesis defense, Carène Rizzon, Université Claude Bernard (Lyon 1), September 19th, 2003 |
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PhD thesis defense, Frédéric Boyer, Université Joseph Fourier (Grenoble), July 9th, 2004 |
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PhD thesis defense, Jean-François Dufayard, Université Joseph Fourier (Grenoble), December 14th, 2004 |
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PhD thesis defense, Loïc Ponger, Université Claude Bernard (Lyon 1), September 16th, 2003 |
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Training and job opportunities |
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| What is bioinformatics? |
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A short introduction to bioinformatics |
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The first genome projects |
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Whole genome sequencing |
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Genomic databases |
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The problem of heterogeneous databases |
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Searching for homology through similarity of sequences |
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Finding genes in procaryotic genomes |
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Finding genes in eucaryotic genomes |
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Inferring gene functions from homology relationships |
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The quest for gene fonction has not yet found an algorithmic solution |
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Modeling and simulating gene interaction networks and metabolic pathways |
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Biological data and knowlege need to be formalized |
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Another, more recent, introduction to bioinformatics (in French) |
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La bioinformatique, un dossier du site Interstices |
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A series of five papers (in French) published by the Biofutur journal in March 2007 |
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Editorial of the March 2007 issue of Biofutur journal |
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The abstracts of the papers |
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A series of five pedagogical papers on bioinformatics |
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In silico annotation of genomic sequences |
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Biological data and knowledge modeling |
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Modelling, analysis and simulation of gene networks |
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Comparative genomic mapping in mammals |
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Molecular phylogeny and evolution |
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A series of nine papers published (in French) by the Biofutur journal in 2005 |
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Editorial of the January 2005 issue of the Biofutur journal |
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The abstracts of the papers (in French) |
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Interactive applets to discover some basic bioinformatics algorithms |
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Recherche de gènes dans un génome bactérien |
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Alignement optimal de deux séquences biologiques |
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Some key terms of molecular biology and their definition (in French) |
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Macro-molécules, ADN, ARN, protéine, acide aminé,... |
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Gènes, génome, génomique,... |
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Code génétique, traduction, ARNm, ARNt, ARNr,... |
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Eucaryotes/procaryotes, exons/introns, épissage,... |
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Transcription, transcriptome, puces à ADN,... |
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Protéines, protéomique, structure, fonction,... |
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Régulation, signaux, réseaux,... |
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Bioinformatics as a research domain |
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Genomic and post-genomic data and knowledge modeling |
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Glossary |
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Bibliography |
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The art of Genes - How organisms make themselves |
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Gene regulation and metabolism : postgenomic computational approaches |
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Error-tolerant identification of peptides in sequence databases by peptide sequence tags. |
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