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De Jong, Hidde
Piecewise-linear models of genetic regulatory networks: Equilibria and their stability
  R. Casey, H. de Jong, J.-L. Gouzé  
  Journal of Mathematical Biology, 52(1):27-56, 2005.  
Qualitative approaches towards the analysis of genetic regulatory networks
  H. de Jong, D. Ropers  
  Z. Szallasi, V. Periwal, J. Stelling (eds), System Modeling in Cellular Biology: From Concepts to Nuts and Bolts, MIT Press, Cambridge, MA, 125-148, 2006.  
Modeling, analysis, and simulation of genetic regulatory networks: From differential equations to logical models
  H. de Jong, D. Thieffry  
  In: D. Chatenay, S. Cocco, R. Monasson, D. Thieffry, J. Dalibard (eds.), Multiple Aspects of DNA and RNA: From Biophysics to Bioinformatics, Ecole d'été de Physique des Houches, Session LXXXII, Elsevier, Amsterdam, 2005, 325-351.  
Genetic Network Analyzer: Qualitative simulation of genetic regulatory networks
  H. de Jong, J. Geiselmann, C. Hernandez, M. Page  
  Bioinformatics, 19(3): 336-344, 2003  
Modeling and simulation of genetic regulatory networks by ordinary differential equations
  H. de Jong, J. Geiselmann  
  J. Chen, E.R. Dougherty, I. Shmulevich, Z.J. Wang (eds), Genomic Signal Processing and Statistics, Hindawi Publishing Corporation, New York, 2005, 201‑239.  
Qualitative simulation of genetic regulatory networks using piecewise-linear models
  H. de Jong, J.-L. Gouzé, C. Hernandez, M. Page, T. Sari, J. Geiselmann  
  Bulletin of Mathematical Biology, 66(2):301-340, 2004.  
Qualitative simulation of the initiation of sporulation in Bacillus subtilis
  H. de Jong, J. Geiselmann, G. Batt, C. Hernandez, M. Page  
  Bulletin of Mathematical Biology, 66(2):261-300, 2004.  
Control of bacteriophage Mu lysogenic repression
  C. Ranquet, A. Toussaint, H. de Jong,G. Maenhaut-Michel, J. Geiselmann  
  Journal of Molecular Biology, 353(1), 186-195, 2005.  
Analysis and verification of qualitative models of genetic regulatory networks: A model-checking approach
  G. Batt, D. Ropers, H. de Jong, J. Geiselmann, R. Mateescu, M. Page and D. Schneider  
  Poster at the Nineteenth International Workshop on Qualitative Reasoning (QR'05), in B.Rinner, M. Hofbaur and F. Wotawa, eds., pp 54-59. 2005  
paper (PDF; 167 ko)
  Modeling the dynamics of genetic regulatory networks: Continuous and discrete approaches
  H. de Jong, R. Lima  
  J.-R. Chazottes, B. Fernandez (eds), Dynamics of coupled map lattices and of related spatially extended systems, Lecture Notes in Physics 671, Springer-Verlag, Berlin, 307-340, 2005.  
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See also
Batt, Grégory
Boyer, Frédéric
Bronner, Gisèle
Calteau, Alexandra
Coissac, Eric
Daubin, Vincent
De Jong, Hidde
Declere, Stéphane
Drulhe, Samuel
Dufayard, Jean-François
Duret, Laurent
Gautier, Christian
Gouy, Manolo
Gueguen, Laurent
Hernandez, Céline
Lobry, Jean
Marais, Gabriel
Meunier, Julien
Morgat, Anne
Mouchiroud, Dominique
Nugues, Estelle
Page, Michel
Penel, Simon
Perrière, Guy
Piganeau, Gwenaele
Pisanti, Nadia
Ponger, Loïc
Rechenmann, François
Réguer, Erwan
Rivière-Rolland, Hélène
Rizzon, Carène
Ropers, Delphine
Sagot, Marie-France
Semon, Marie
Silvestre, Timothée
Spataro, Bruno
Tannier, Eric
Viari, Alain
Ziébelin, Danielle
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